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Accueil > Colloques, journées d’étude, conférences > Bridging the philosophies of biology and chemistry

Bridging the philosophies of biology and chemistry



Colloque


25-26-27 juin 2019
Université Paris Diderot

Salle 454A, bâtiment Condorcet, 4, rue Elsa Morante, 75013 Paris *


Programme
Description
Actes du colloque
Appel à communications



Organisateurs

  • Dr. Jean-Pierre Llored (SPHERE, Universié Paris Diderot, France ; Linacre College, Oxford University, Oxford, UK), Dr. Joachim Schummer (Red. Chef de Hyle, International Journal for the Philosophy of Chemistry), Dr. Quentin Hiernaux (Free University of Brussels) and Dr. Cécilia Bognon-Kuss (IHPST and University Paris 7)


Objectifs
Après avoir organisé le premier colloque de philosophie de la chimie en France en juillet 2017, il s’agit cette fois de proposer un colloque inédit, au niveau international, dans lequel deux communautés qui travaillent séparément, à savoir la communauté des philosophes de la chimie et celle des philosophes de la biologie, vont se rencontrer pour discuter en présence de nombreux chimistes, biologistes, écologues, toxicologues et écotoxicologues, des évolutions récentes des deux disciplines et de leurs conséquences en termes scientifiques, éthiques, épistémologiques, philosophiques, sociologiques et anthropologiques. Voir la description du projet ci-dessous.



Soutiens
– les laboratoires SPHERE et LIED, le département d’histoire et de philosophie des sciences (HPS) et l’Institut Humanités, Sciences, Société, de l’Université Paris Diderot.
– l’Université Libre de Bruxelles, l’Université de Lille, la Fondation de la Maison de la Chimie, la Société Chimique de France.
Nos remerciements pour leur soutien intellectuel :
– le CNRS, dans le cadre de la célébration de ses 80 ans d’existence,
– l’International Society for the Philosophy of Chemistry,
– le Cercle des Philosophes de la nature, supervisé par Miguel Espinoza



PROGRAMME


MARDI 25 JUIN

10:00
Bienvenue et café
10:30 Introduction
Session I
NEW SCIENTIFIC WORKS AND ETHICAL IMPLICATIONS
Chair : Cécilia Bognon-Kuss
10:45 Stephane Sarrade (Commissariat à l’énergie atomique et aux énergies alternatives de Saclay, France)
Green Chemistry and ecology
11:15 Barbara Demeneix et Jean-Baptiste Fin, (Museum National d’Histoire Naturelle, Paris)
Importance of fetal thyroid hormone signaling for brain development : a window of vulnerability for endocrine disruption
11:45 Grant Fisher (Korea Advanced Institute of Science and Technology, Korea)
The ethics and epistemology of stem cell toxicity models
12:15
Déjeuner
Session II
HISTORICAL STUDIES
Chair : Quentin Hiernaux
13:30 Tonino Drago (University “Federico II” of Naples, Italy)
A common foundation of biology and chemistry according to a
Leibniz’s suggestion
14:00 Miguel Escribano Cabez (University of Basque Country, Spain)
G.W. Leibniz and the problem of constitution and genesis of the organic bodies. Eduction and preformationism
14:30 Sarah Hijmans (Université Paris Diderot, France)
Oxygen and the reactions of life in Lavoisier’s chemist
15:00
pause
15:30 Cecilia Bognon-Kuss (IPHST & Université Paris Diderot, France)
From Stoffwechsel to metabolism : The rise of a chemical biology
16:00 Sarah Franceschelli (ENS of Lyon, France)
Instabilities first ! A relational interpretation of Turing’s approach to morphogenesis
16:30 Ute Deichmann (Ben-Gurion University of the Negev, Beer Sheva, Israel)
Data, theory, and scientific belief in early molecular biology : Pauling’s and Crick’s conflicting notions about the genetic determination of protein synthesis and the solution to the ’secret of life’
17:00
Fin de la journée

MERCREDI 26 JUIN

9:30
Accueil et café
Session IIIa
ONTOLOGICAL ISSUES
Chair : Joachim Schummer
10:45 Keynotespeaker Stephan Guttinger (Centre for Philosophy of Natural and Social Science, London School of Economics, United Kingdom)
Understanding the nature of molecules : Process ontology and scientific practice
11:00
pause café
11:15 Donato Bergandi (Museum National d’Histoire Naturelle, Paris)
Rethinking emergence
11:45 Jean-Pierre Llored (SPHERE, University Paris Diderot, France ; Linacre College, Oxford University, UK)
Relational ontologies in chemistry, biology, and ecology : An investigation
12:15 Quentin Hiernaux (FNRS-FUB, Belgium)
Do chemical substances have ecological existence conditions ?
12:45
Déjeuner
Session IIIb
ONTOLOGICAL ISSUES
Chair : Stephan Guttinger
14:00 Guglielmo Militello (University of the Basque Country and IAS-Research Centre for Life, Mind & Society, Spain)
Structural and organisational conditions for being a machine
14:30 Daniel J. Nicholson (Konrad Lorenz Institute for Evolution and Cognition Research, Austria)
Is it appropriate to conceptualize biological macromolecules as molecular machines ?
15:00
pause café
15:30 Klaus Ruthenberg (Coburg University of Applied Sciences and Arts, Germany)
Acids : Chemical or biological kinds ?
16:00 Gregor Greslehner (CNRS & University of Bordeaux, France)
What is the explanatory role of the structure-function
relationship in immunology ?
16:30
Fin de la journée

JEUDI 27 JUIN

9:00
Accueil et café
Session IV
BRIDGING CONCEPTS & APPROACHES
Jean-Pierre Llored
9:30 Keynote speaker : Samir Okasha (President of the European Philosophy of Science Association, Bristol University, United Kingdom)
Can the philosophy of biology provide any lessons for the philosophy of chemistry ?
10:30
pause café
10:45 Olivier Sartenaer (University of Cologne, Germany)
A place of its own ? On the role of chemistry in the dispute over the reducibility of biology to physics
11:15 Jerome Santolini (Institute for Integrative Biology of the Cell, University Paris-Saclay, France) et Martin Feelisch (Faculty of Medicine and Institute for Life Sciences, University of Southampton, United Kingdom)
Redox chemistry as the principal biological language
11:45 Michael Tobin (Independent scholar, Baltimore, USA)
Species as Quanta ? : State discreteness in biology
12:15
Déjeuner
13:30 Michele Friend (Georgetown University, USA)
Conceptual analysis in chemistry and biology using formal languages
14:00 Benjamin J. McFarland (Seattle Pacific University, USA)
The power of dissipative systems for chemical and biological explanation
14:30 Petra R. M. Maitz (Konrad Lorenz Institute for Evolution and Cognition Research, Austria)
RNA folding manner creates new insights of selforganising systems, a metamodernism ?
15:00
pause café
Session V
SYNTHETIC BIOLOGY
Chair : Cécilia Bognon-Kuss
15:30 Franck Dumeignil (Chemistry Department, University of Lille, France)
Hybrid catalysis as a new topical concept bridging biotechs and chemistry
16:00 Joachim Schummer (Editor-in-chief of Hyle, International Journal for the Philosophy of Chemistry)
Knowing through making : A comparison between synthetic chemistry and synthetic biology
16:30 Massimiliano Simons (KU Leuven, Belgium)
Dreaming of a universal biology
17:00 Dominic J. Berry (London School of Economics and Political Science, United Kingdom)
The synthesis of DNA : Chemical subunits making a narrative of biological engineering
17:30
Discussion générale et organisation du deuxième colloque en 2020
18:30
Fin du colloque

INFORMATIONS PRATIQUES
Bâtiment Condorcet, Université Paris Diderot, 4, rue Elsa Morante, 75013 - Paris. Plan.
Calculer votre itinéraire avec le site de la RATP

Métro : lignes 14 and RER C, arrêt : Bibliothèque François Mitterrand ou ligne 6, arrêt : Quai de la gare. Bus : 62 and 89 (arrêt : Bibliothèque rue Mann), 325 (arrêt : Watt), 64 (arrêt : Tolbiac-Bibliothèque François Mitterrand)



Actes du colloque
Publication prévue dans le cadre du journal Hyle (2 numéros spéciaux en 2020 et 2021) dont le rédacteur en chef est Joachim Schummer, coorganisateur du colloque.



Description

Background

For much of the twentieth century, philosophy of science had almost exclusively been focused on physics and mathematics. Other scientific disciplines were considered only in case studies that should support ideas of so-called general philosophy of science, which was largely a debate on the progress of physics, and especially of theoretical physics, across the conceptual shifts from classical mechanics to relativity theory and quantum mechanics.
Dissatisfied with that one-sided focus on physics, scientists, historians of science, and philosophers, usually with a background in another discipline, developed philosophical approaches to other sciences in the late 20th century. Philosophy of biology emerged in the 1970s, philosophy of chemistry in the early 1990s, and many others would follow soon. Nowadays almost all larger scientific disciplines entertain their own philosophies, which are largely disconnected from each other [1]. They each explore conceptual, epistemological, methodological, ontological, metaphysical, ethical, aesthetic, etc. issues of their particular discipline. This situation was foreseen by Bachelard who once stated that “[e]ach interesting problem, each experiment, or even each equation required a philosophical reflection of its own” [2]. Apart from the common involvement in philosophies of new interdisciplinary fields, such as nanotechnology and bio-nanotechnology, and sometimes in the framework of ethics committee as well, the interaction between philosophers of different disciplines is much underdeveloped. As a result, philosophers belonging to one domain usually ignore a great part of the work done by their colleagues in another domain, which prevents them from studying the way those sciences influence one another, and from implementing new research cooperations, which could turn out to be of importance in order for them to scrutinize those sciences from a philosophical standpoint.
After a period of the emergence of various philosophies of sciences it appears overdue to take not only stocks but also to find new ways to connect the manifold philosophical approaches. This workshop, which is the first of its kind, aims at building bridges between the philosophies of biology and chemistry by exploring common grounds or topics of interest on both the level of philosophical approaches and the level of interdisciplinary fields between biology and chemistry.


Intermediary/interdisciplinary fields

There are various interdisciplinary research fields bridging biology and chemistry, e.g. biochemistry, bioinorganic chemistry, biomimetic chemistry, geochemistry, medicinal chemistry, pharmacy, (eco)toxicology, molecular biology, chemical ecology, synthetic biology, chemical evolution (historical origin of preforms of life), supramolecular chemistry, medicine, and environmental science. Furthermore, many chemical projects and teams are now integrated into biology departments in universities all over the world and thus depend on them. In addition, methods and tools originating from ecology and biology, as for instance the life cycle analysis, are now used by green chemists who are gradually learning how to use and improve it in order to make eco-conception a better place in chemistry. This double context, first of the emergence and stabilization of a wide range of intermediary and interdisciplinary fields entangling biology and chemistry, and second of the reorganization of the chemical research done in biology departments, requires new philosophical investigations at least in order to check how, and to what extent, this new coexistence changes the way biology and chemistry are currently done. Following this line of thought, philosophers could address specific issues, among them are :

  • (1) Biologists have supplied [a simplistic,] mechanistic description of proteins (macromolecules) as nanomachines. More recently, a statistical description of protein folding and protein transconformation has become dominant. Has a similar transformation also occurred in chemistry ? More and more chemists are working on « biological objects ». Does it mean that the boundary between biology and chemistry is presently shifting ?
  • (2) How do intermediary and interdisciplinary new domains or practices bridge biology and chemistry ?
  • (3) Which disciplinary perspectives and resources do they combine ?
  • (4) Do they develop new, intermediary concepts that are independent of both biology and chemistry or do they recombine existing concepts in a creative manner ?
  • (5) How are the different inferences drawn from chemical and biological experiments formulated inone report in order to address a specific question ?
  • (6) Do those interactions transform chemical and biological types of reasoning and do they transform the way the practitioners give sense to what they do, and if so in what manner ?
  • (7) Can those interactions be usefully described and understood by Kuhn’s, Lakatos’s, Popper’s or any other key description of the way knowledge evolves in science ? Or, by contrast, do they pave the way for a new understanding of the production, stabilization and evolution of scientific knowledge ?


Epistemological and methodological issues
Another group of issues about which the workshop aims to provide insigthts deals with the differences and resemblances between both the types of knowledge and methods used by chemists and biologists in their specific laboratories. To do so, we will ask the following questions :

  • (1) Biology and chemistry stand out among all the sciences by having developed the by far most powerful classifications, including for instance taxonomies and the [different forms of the] periodic table. What are the commonalities and differences of these classifications and their underlying concepts of species, property, similarity, supporting theories etc.?
  • (2) Are biology and chemistry each striving for a unified and reductionist master theory, such as physics, or do they follow methodological pluralism of a variety of models tailored to certain epistemic needs and based on interdisciplinary exchanges ?
  • (3) Do biology and chemistry differ in their way of developing and stabilizing concepts, models, theories, nomenclatures, pictures and representations, instruments and laboratories ? Do they have different forms of experimentation, explanation, representation, and prediction ? Do they differ in their use of quantitative concepts and the degree of mathematization ? Following this line of questioning, a comparison between the representations (of processes and objects) in chemistry and biology would be particularly interesting.
  • (4) A recent trend in biology has been to focus on ‘systems’ (systems biology) and to reject the previous forms of reductionism. Sytemic approaches are developed in chemistry as well, as it is the case for instance in green chemistry and supramolecular chemistry. Is it possible to establish a parallel between those activities ? Are ‘systems’ defined and understood in the same way by biologists and chemists ? What is the epistemological status of such ‘systems’ ? How is this notion related to that of ‘network’ in biological and chemical research programmes ? Are systems and networks only metaphors in chemistry and biology ?
  • (5) Genetic determinism has played a central role and is still exerting a strong influence on the way biology is used for understanding certain diseases. The role of genetic information is characteristic of biology. A recent approach, namely epigenetics, develops a wider scheme in which apart from genes other factors have an impact on the expression of genetic information, and thereby shape cells, tissues, and the relationships between the environment of the organism under study and the organism itself. Also chemists are talking about ‘molecular information’ in supramolecular chemistry or whenever they design what they call ‘a chemical computer’ and a ‘molecular logic.’ Is it possible to compare the mutual dependence of a chemical and its surroundings in chemistry with the epigenetic approach in biology and, more broadly speaking, to draw stronger parallels between the domains of chemistry and biology in which information is of primary importance ? [Using the sociology of translation of phrase, h] How has the notion of information been translated from information theory to biology and chemistry ?
  • (6) What is the role of historical and teleological/functional explanations in biological and chemical research practice ? How is that represented in their respective scientific self-image and philosophical understanding ?
  • (7) Has biology, as many have claimed, recently followed chemistry’s earlier move from an analytic to a synthetic approach (particularly in synthetic biology) based on the verum-factum principle (“knowing-through-making”) ? Moreover, the significance of synthetic biology is heavily debated in biology. How do chemists consider this new discipline ?
  • (8) What particular forms of graphic/pictorial tools and sign languages have biologists and chemists developed for representing their knowledge ? Do they essentially differ from each other or do they overlap and inspire each other to a certain extent ?
  • (9) What are the wholes/parts strategies, i.e. the way in which something is divided up in parts and in which parts are said to build up wholes, used both in chemistry and biology ? Are they similar ? What do those strategies tell us about the way biologists and chemists understand and describe the world ? Are those forms of mereology compatible with the conclusions drawn by holistic and reductionist approaches from wholes and parts or, by contrast, could they enable philosophers to overcome the holims/reductionism dichotomy and, if so, in what manner ?


Ontological and metaphysical issues

  • (1) How do (philosophy of) biology and chemistry conceptualize their basic entities ? Do they favor an individualist, relationalist, structuralist, functionalist, or systems approach ? What is the relevance of the ontological category ‘property’ for chemistry and biology ? Do chemists and biologists favor manifest or dispositional properties ? Do they favor substance ontology, affordances and dispositions ontology, or process ontology ? Do they believe in natural kinds or in nominalism ?
  • (2) A relational understanding of chemicals and life is arising in many domains of chemistry and biology, including for instance in ‘integrative chemistry’ and ‘sustainable chemistry’ on the one hand, and in epigenetics, biohermeneutics, the study of plants and geochemistry on the other. Those approaches rely on ‘the mutual dependence of a chemical or of an organism and its surroundings.’ Some philosophers [3] start using the concept of ‘associated milieu’, coined by the philosopher of technology Gilbert Simondon [4], in order to insist on the fact that a ‘milieu’ should not be understood as something already given, but rather as that complement of the individual that is brought into being by processes of individuation. Is the ‘milieu’ in which a chemical is synthesized or introduced, or in which an organism is living just a place detachable from the body under study, or, by contrast, an active element of its constitution ? Do chemicals and living beings consist in a provisional unity of doings[actions/interactions ?] in particular ‘associated milieus’ ? Is the modus operandi of their actions upon other bodies, and through the action of other bodies upon them, the only possibility we have to clarify their ontological status ? Is this milieu dependence a starting point for developing a relational approach of the concept of structure in biology and chemistry as well ? Is the concept of ‘milieu’ useful to unify different domains of science ?
  • (3) What is the meaning of causation in (philosophy of) biology and chemistry ? Is it similar to the deterministic concept of physics ? Or is causation a pluralistic concept that can involve structure and function besides efficient causes ?
  • (4) If chemicals and living beings of different kinds depend, even partly, on the way [the surrounding acts ?] upon them or on the way they act upon what surrounds them, the phrase “all other things being equal” is difficult to apply in chemistry and biology in the case of changing individual context factors because factors mutually depending on each other change at the same time . What is the status and the meaning of the Ceteris Paribus clause in chemistry and biology ? Do they depend on particular types of metaphysics and epistemology[ which remain to be identified as being connected] ? [unclear ?]
  • (5) How do (philosophy of) biology and chemistry deal with physicalism, the powerful reductionist notion that all real entities and all truly scientific approaches belong to physics ? Do they ignore it, develop counter-reductionist approaches, or do they have their own reductionist positions, such as biologism and chemicism ?
  • (6) How do (philosophy of) biology and chemistry distinguish between natural and artificial or between nature and technology ? How could the study of the natural/artificial dichotomy from the standpoint of chemistry and biology enable philosophers to renew their understanding of science and technology ?


Historical case studies on the separation and convergence of biology and chemistry

  • (1) During the 19th-century, chemists, biologists, and physicians were commonly involved in various big debates (e.g. on vitalism, the possibility of spontaneous generation of life, the nature of fermentation, the causes of infectious diseases [5]). How did they manage to cross the then already existent disciplinary boundaries ? Why did the tradition of cross-disciplinary big debates fade ?
  • (2) How did general ideas – such as evolution, emergence, imitating nature, systems approaches, and reductionism/physicalism – as well as other disciplines – such as medicine and physics – contribute to the separation/integration of biology and chemistry ?
  • (3) How did biochemistry and molecular biology split ? Was the adoption of the information paradigm by molecular biology the essential move as many have claimed ? Are recent approaches to introduce the information paradigm into (supramolecular) chemistry (“molecular recognition”) moves towards convergence ?
  • (4) How do chemists and biologists work together in industrial, academic, and governmental or international institutions ? How do they interact with toxicologists and ecotoxicologists in institutions dedicated to chemical regulation, as it is the case for instance within ECHA (the European Chemical Agency) in the framework of REACH ?
  • (5) The question of the origin of life is particularly important to appreciate the potential epistemological convergences and divergences between biology and chemistry. How do chemistry and biology interact for investigating the origin of life ? How does this interaction change our understanding of both the emergence of life and its evolution ?
  • (6) What is or are the role(s) of biology and chemistry in the rise of the environmental sciences ?


Ethical issues

Chemicals change the relationships we have with our body, ourselves, the other forms of life, and the Earth. In this sense, they take actively part in our life and the constitution of what we are. The way they intervene upon us and are inside us, the way they enable us to change ourselves and the world imply that they are not simply ‘external objects or products’, rather they constitutively shape us, which has many ethical implications. Ethical issues to be adressed include :

  • (1) Biologists and chemists have both been involved together in many ethical issues of public concern, including animal experiments, genetic engineering, patenting DNA, attempts at creating artificial life, human enhancement, food safety, human health etc. How did (philosophy of) biology and chemistry respond to public concerns ?
  • (2) How is ethics integrated in the philosophies of biology and chemistry ? Or do both follow an ethics-free understanding of philosophy of science after the model of philosophy of physics ?
  • (3) How can the philosophies of biology, ecology, and chemistry be of help for environmental ethics and for the philosophy and the anthropology of nature [6] ?
  • (4) How can the philosophies of chemistry and biology interact with moral philosophy for discussing, for instance, utilitarists approaches of technology or the ethics of care [7] ?
  • (5) What are the relationships between ethics and chemistry, and especially the kinds of ethical principles and arguments to which chemists and policy-makers have referred since the 19th century ? What are the roles played by ethical principles in chemical regulations, and especially by the Precautionary Principle in the emergence of REACH ?
  • (6) What are the relationships between ethics and biology, and especially the kinds of ethical principles and arguments to which biotechnologies have referred so far ?
  • (7) Do the relational approaches developed by a growing number of chemists, biologists and philosophers weaken the argument of the intrinsic value of life [individual living beings ?] from an ontological standpoint while opening the door for a pragmatic new understanding of this argument ?
  • (8) How can the philosophies of chemistry and biology help investigate sustainability and biodiversity ? How can they help investigate the rise of an eco-friendly turn in sciences and technology ?


Political and juridical issues
As disciplines, chemistry and biotechnologies are also permanent sources of new unknowns, which justifies our paying special attention to the risks they potentially raise for us, and for other forms of life. Following this line of investigation, many questions have to be addressed, as for instance :

  • (1) How can the philosophies of chemistry and biology be of help to clarify the definitions of risks, hazards, substances, organisms, among many other key concepts upon which regulations, environmental policies and laws rest ? How can they contribute to policy making ?
  • (2) How can philosophers of chemistry and biology interact with law experts in order to improve the efficacy of regulation and to implement sustainable development ?
  • (3) How can philosophers of chemistry and biology interact together with political philosophers to develop new models of public debate and deliberative forms of democracy in which all stakeholders have the same right to take part in the decision-making about science and technology ?
  • (4) How could the epistemology of the models used in medicine and quantum chemistry, drugs design, ecology and ecotoxicology, as for instance in risk assessment using QSAR (Quantitative Structure Activity Relationships) models, play a role in the way modelling is used and understood by governments in order to make environmental and heath policy decisions ?
  • (5) How could the philosophies of biology and chemistry promote the reconceptualization of concepts, such as emergence, discovery and innovation [?], by integrating the pragmatic, socio-political, technological, and institutional conditions of chemical and biological research into the philosophical reflection about those concepts, in order to face the environmental and social issues of our time ?



Notes de bas de page (pour remonter dans le texte, cliquer sur le n°)

    • 1 Fritz Allhoff (ed.), Philosophies of the Sciences : A Guide, Blackwell-Wiley, 2010 ; Thomas Reydon & Simon Lohse (eds.) : Grundriss Wissenschaftsphilosophie. Die Philosophien der Einzelwissenschaften, Hamburg : Meiner, 2017
    • 2 Bachelard Gaston, The Philosophy of No, Trans. G. C. Waterson, New York : Orion, 1968, p. 40. La philosophie du non : Essai d’une philosophie du nouvel esprit scientifique, Paris : Presses Universitaires de France, 1940
    • 3 Llored, J.-P., “Investigating Consistencies, Inconsistencies, and the Meaning of the Ceteris Paribus Clause in Chemistry”, Humana Mente, Journal of Philosophical Studies, 2017, Vol. 32, 53–74.
    • 4 Simondon Gilbert, L’individuation à la lumière des notions de forme et d’information, Paris : Presses universitaires de France, 1964
    • 5 Joachim Schummer : “Chemical versus Biological Explanation : Interdisciplinarity and Reductionism in the 19th-Century Life Sciences”, in : Joseph E. Earley (ed.), Chemical Explanation : Characteristics, Development, Autonomy, New York (Annals of the New York Academy of Science, Vol. 988) 2003, pp. 269-281.
    • 6 Llored, J.-P., “How Philosophy of Nature needs Philosophy of Chemistry”, Philosophica, 2016, Special issue ‘Thinking Nature Today’, Vol. 47, 93–108
    • 7 Llored, J.-P. & Sarrade, S., “Connecting the Philosophy of Chemistry, Green Chemistry, and Moral Philosophy”, Foundations of Chemistry, 2016, Vol. 18, n° 2, 125-152.


Appel à communications

  • soumission des résumés jusqu’au 15 janvier 2019 à l’adresse :
    jean-pierre.llored@linacre.ox.ac.uk
  • réponse des organisateurs : 31 janvier 2019.
  • inscription des participants : 30 avril 2019